BtaEX6072756 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57954313-57958532:+
Coord C1 exon
chr17:57954313-57954510
Coord A exon
chr17:57955271-57955464
Coord C2 exon
chr17:57958397-57958532
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCAGTGGTGCTGATTTGCAGACG
3' ss Score
5.5
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTGATCACGGACTTGGAGGAGCAGCTAAACCAGCTGACGGAGGACAATGCCGAGCTCAACAACCAAAACTTCTACTTGTCTAAACAACTCGATGAGGCCTCTGGTGCCAACGACGAGATTGTGCAGCTGCGAAGTGAAGTGGACCATCTCCGCCGCGAGATCACTGAGAGGGAGATGCAGCTCACTAGCCAGAAGCAA
Seq A exon
ACGATGGAGGCGCTGAAGACCACGTGCACAATGCTGGAGGAGCAGGTCATGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGGCAGTGGGAGGCCTGGAGGAGTGTCCTTGGTGACGAGAAGTCCCAGTTTGAGTGTCGGGTTCGAGAGTTGCAGAGGATGCTGGACACCGAAAAGCAGAGCAG
Seq C2 exon
GGCGAGGGCCGACCAGAGGATCACTGAGTCGCGCCAGGTGGTCGAGCTGGCAGTAAAGGAGCACAAGGCCGAGATCCTGGCCTTGCAGCAGGCTCTCAAGGAGCAGAAGCTGAAGGCCGAGAGCCTCTCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-'37-33,'37-32,39-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.368 C2=0.174
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
PF0149614=V_ATPase_I=FE(40.8=100)
C2:
PF0149614=V_ATPase_I=PD(17.2=58.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCAGCTGACGGAGGACA
R:
CTCGGCCTTGTGCTCCTTTAC
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]