MmuEX6020820 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123621796-123623270:-
Coord C1 exon
chr5:123623213-123623270
Coord A exon
chr5:123622756-123622839
Coord C2 exon
chr5:123621796-123621952
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTAACTTTATCCTAATAGATA
3' ss Score
6.97
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAGAAAAGTTTGCCAGTACTTCAGAGGAGGCGGTCTCTGCTCAGACAAGGATGCAAG
Seq A exon
ATACCGTAAATAAACTGCACCAAAAGGAGGAACAGTTTAACGTGTTGTCGTCTGAACTGGAGAAGTTGAGAGAAAATTTAACAG
Seq C2 exon
ACATGGAGGCAAAATTTAAAGAGAAGGATGATCGAGAAGATCAGCTGGTAAAGGCAAAGGAAAAATTAGAAAACGACATTGCAGAAATAATGAAGATGTCAGGAGATAACTCTTCTCAGCTGACAAAGATGAATGATGAATTACGTCTGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'42-31,'42-30,43-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.649 C2=0.844
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(5.5=70.0),PF057016=WEMBL=FE(12.6=100)
A:
PF057016=WEMBL=FE(18.5=100)
C2:
PF057016=WEMBL=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCAGAGGAGGCGGTCT
R:
TGTCAGCTGAGAAGAGTTATCTCCT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types