BtaEX0009242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55314422-55316845:+
Coord C1 exon
chr17:55314422-55314479
Coord A exon
chr17:55315681-55315764
Coord C2 exon
chr17:55316689-55316845
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTAACTTAATCCCAAATAGAAA
3' ss Score
4.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAGAAAAGTTTGCTGATGCTTCAGAGGAGGCAGTCTCTTTTCAGAGAAGTATGCAAG
Seq A exon
AAACTGTAAATAAATTACATCAAAAAGAGGAACAGTTTAACGCACTGTCTTCCGAACTGGAGAAGTTGAGAGAAAATTTAACAG
Seq C2 exon
ATATGGAGGCAAAATTTAGAGAGAGAGATGAAAGGGAAGAGCAGCTGATAAAGGCAAAAGAAAAACTGGAAAATGACATTGCAGCAATAATGAAAATGTCTGGAGACAATTCTTCTCAGCTGACAAAAATGAATGACGAACTACGTCTGAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.793 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGAGGAGGCAGTCTCT
R:
TCGTCATTCATTTTTGTCAGCTGA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development