GgaEX0006010 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5887396-5889330:-
Coord C1 exon
chr15:5889273-5889330
Coord A exon
chr15:5888956-5889039
Coord C2 exon
chr15:5887396-5887552
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTAAAATTTTACTTGCTTAGAAA
3' ss Score
5.34
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AAAGAAAAATTTACTAGTGCAGTTGATGGAGCAGAAAATGCTCAACGCGCTATGCAAG
Seq A exon
AAACAATAAACAAACTAAACCAAAAAGAAGAACAGTTTGCACTTATGTCTTCAGAACTGGAACAACTGAAATCTAATTTGACTG
Seq C2 exon
TGATGGAGACTAAACTGAAGGAGAGAGAAGAGAGAGAACAGCAACTGACTGAAGCTAAAGTCAAACTAGAAAATGATATTGCGGAGATCATGAAGTCATCAGGAGACAGCTCTGCCCAGCTTATGAAAATGAATGATGAGCTACGGTTAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-9/21=8-10
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.448 C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGTTGATGGAGCAGAA
R:
TTTTCATAAGCTGGGCAGAGC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]