DreEX6014511 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66533209-66535315:-
Coord C1 exon
chr5:66535258-66535315
Coord A exon
chr5:66535088-66535171
Coord C2 exon
chr5:66533209-66533365
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGAAATTTGTCTTTCTCAGAGT
3' ss Score
8.46
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAGCAGAATCTTGAAAAAACGACGAACGATCAAGCCAAATCATCTCAGACAAATCAAG
Seq A exon
AGTTACAAGAAGAGCTCAGGAATAAGGAGGACAAATGCACATCACTTTCTGCTGAATTACAGGACACGAAGAGTCAACTTGCTG
Seq C2 exon
GTTTACAAAGAAGTTTAAAAGCAAGTGAGGAGAGGTGTCTGCTGCTGACCAAAGACAAGACTAAACTTGAGAATGACATTATGGACATGACAAAGTCTTCAGGAGACAGTTCTACACTCATAACAAAGCTGAATGAGGAAAACAAGCGGAAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATCAAGCCAAATCATCTCAGA
R:
CCGCTTGTTTTCCTCATTCAGC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]