RnoEX6064377 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38407145-38408544:+
Coord C1 exon
chr12:38407145-38407202
Coord A exon
chr12:38407570-38407653
Coord C2 exon
chr12:38408388-38408544
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTTATCCTAATAGATA
3' ss Score
7.6
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAGAAAAGTTTGCCAGCGCTTCAGAGGAGGCCGTCTCTACTCAGACAAGTATGCAAG
Seq A exon
ATACTGTTAATAAACTGCACCAAAAGGAGGAACAGTTTAATATGTTGTCTTCTGAACTGGAGAAGCTGAGAGAAAATTTAACAG
Seq C2 exon
ACATGGAGGCAAAATTTAAAGAGAAGGATGAACGGGAAGATCAGCTGGTAAAGGCAAAGGAAAAGTTAGAAAATGACATTGCAGAAATAATGAAGATGTCAGGGGACAACTCTTCTCAGCTGACAAAGATGAATGACGAATTACGTCTGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'34-24,'34-23,35-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.974 C2=0.868
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100)
A:
PF0157614=Myosin_tail_1=FE(9.4=100)
C2:
PF0157614=Myosin_tail_1=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTTGCCAGCGCTTCAGA
R:
AGCTGAGAAGAGTTGTCCCCT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]