MmuEX6026474 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93280481-93281765:+
Coord C1 exon
chr1:93280481-93280594
Coord A exon
chr1:93281237-93281350
Coord C2 exon
chr1:93281652-93281765
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTATCCCTTGTCTGTGCAGAGA
3' ss Score
8.08
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAGTAGATGAGTGCCGGTCTCAGCCATGCCTGCACGGAGGCTCCTGCCAGGACCTCATTGCTGATTACCAGTGCCTCTGCAGCCCGGGGTATGAAGGAGTCCACTGTGAGCTAG
Seq A exon
AGACAGATGAGTGCCAAGCACAGCCATGCAGAAATGGGGGCTCCTGCAGGGACCTCCCCAGGGCTTTCATCTGCCAGTGCCCTGAAGGTTTTGTTGGAATCCACTGTGAAACAG
Seq C2 exon
AGGTGGATGCCTGTGCCTCCAGCCCCTGCCAGCACGGAGGCCGGTGTGAGGACGGTGGTGGGGCCTACCTGTGCGTGTGTCCAGAGGGCTTCTTTGGCTACAACTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'32-37,'32-31,33-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGATGAGTGCCGGTCTCA
R:
CTGTCTCACAGTTGTAGCCAA
Band lengths:
227-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types