GgaEX0008546 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5943197-5944932:+
Coord C1 exon
chr9:5943197-5943310
Coord A exon
chr9:5944237-5944350
Coord C2 exon
chr9:5944819-5944932
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCACATCTCCTCTCTGCAGAAG
3' ss Score
8.21
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGATTGATGAGTGCCGGTCTCAGCCCTGCCTGAACGGTGGCCAATGCAAAGACCGCATCGCCGAGTTCCTGTGCGTGTGCGAGCCGGGATACACGGGCCTCCACTGTGAGTTGG
Seq A exon
AAGTTGATGAGTGCCAATCAGAGCCCTGTAAGAACGGTGGCACCTGCCGGGACCTCCTGGGCTCCTTTGCCTGCTCCTGTCCCGCGGGCTTCATGGGCACCCAGTGCGAAGAAG
Seq C2 exon
AAGTGGACGCCTGTGAGTCAGACCCTTGTCAGAATGGAGGGGAGTGTGAAGGTGATGGAGGTTCCTACCTGTGTGTGTGCCCAGAGGGTTTCTTTGGTTACCACTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'24-21,'24-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATGAGTGCCGGTCTCA
R:
TGTCTCACAGTGGTAACCAAAGA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]