MmuEX6026474 @ mm9
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95177058-95178342:+
Coord C1 exon
chr1:95177058-95177171
Coord A exon
chr1:95177814-95177927
Coord C2 exon
chr1:95178229-95178342
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTATCCCTTGTCTGTGCAGAGA
3' ss Score
8.08
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAGTAGATGAGTGCCGGTCTCAGCCATGCCTGCACGGAGGCTCCTGCCAGGACCTCATTGCTGATTACCAGTGCCTCTGCAGCCCGGGGTATGAAGGAGTCCACTGTGAGCTAG
Seq A exon
AGACAGATGAGTGCCAAGCACAGCCATGCAGAAATGGGGGCTCCTGCAGGGACCTCCCCAGGGCTTTCATCTGCCAGTGCCCTGAAGGTTTTGTTGGAATCCACTGTGAAACAG
Seq C2 exon
AGGTGGATGCCTGTGCCTCCAGCCCCTGCCAGCACGGAGGCCGGTGTGAGGACGGTGGTGGGGCCTACCTGTGCGTGTGTCCAGAGGGCTTCTTTGGCTACAACTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'25-25,'25-22,26-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGATGAGTGCCGGTCTCA
R:
CTGTCTCACAGTTGTAGCCAA
Band lengths:
227-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: