GgaEX0008546 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4399374-4401109:+
Coord C1 exon
chr9:4399374-4399487
Coord A exon
chr9:4400414-4400527
Coord C2 exon
chr9:4400996-4401109
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCACATCTCCTCTCTGCAGAAG
3' ss Score
8.21
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGATTGATGAGTGCCGGTCTCAGCCCTGCCTGAACGGTGGCCAATGCAAAGACCGCATCGCCGAGTTCCTGTGCGTGTGCGAGCCGGGATACACGGGCCTCCACTGTGAGTTGG
Seq A exon
AAGTTGATGAGTGCCAATCAGAGCCCTGTAAGAACGGTGGCACCTGCCGGGACCTCCTGGGCTCCTTTGCCTGCTCCTGTCCCGCGGGCTTCATGGGCACCCAGTGCGAAGAAG
Seq C2 exon
AAGTGGACGCCTGTGAGTCAGACCCTTGTCAGAATGGAGGGGAGTGTGAAGGTGATGGAGGTTCCTACCTGTGTGTGTGCCCAGAGGGTTTCTTTGGTTACCACTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_MULTIEX1-11/12=10-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATGAGTGCCGGTCTCA
R:
TGTCTCACAGTGGTAACCAAAGA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]