MmuEX6026482 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93262104-93265392:+
Coord C1 exon
chr1:93262104-93262217
Coord A exon
chr1:93265038-93265151
Coord C2 exon
chr1:93265279-93265392
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTCCTTACTTGTAGCCC
3' ss Score
9.73
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGCTTCCCACCCCTGTCAGAATGGTGGGACCTGCACCCATGGTGTCAACAGCTTCAGCTGCCAGTGCCCAGCCGGCTTCAAGGGACCCACCTGTGAATCGG
Seq A exon
CCCAATCTCCGTGTGACAACAAAGTATGTCAAAATGGTGGCCAGTGCCAGGCAGAGAGCAGCTCTGCAGTATGTGTGTGTCAGGCTGGATACACTGGGGCCACCTGTGAGACAG
Seq C2 exon
ATGTGGATGAATGCAGTTCTGACCCATGCCAGAATGGGGGATCATGTGTTGACCTGGTTGGAAACTACAGCTGTATTTGTGTGGAGCCCTTCGAGGGACCTCAGTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAACGAGTGTGCTTCCC
R:
CTGTCTCACACTGAGGTCCCT
Band lengths:
228-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types