GgaEX1054458 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5938310-5940218:+
Coord C1 exon
chr9:5938310-5938423
Coord A exon
chr9:5939819-5939932
Coord C2 exon
chr9:5940105-5940218
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTGTCCCGCTGCAGAAG
3' ss Score
8.43
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACGTGGATGAGTGTCTGTCTCACCCGTGCCAAAACGGAGCCACCTGCATCAACAGCGTCAACAGCTTCAGCTGCCAGTGCCTGCCAGGCTTCAGAGGTGCCAGCTGTGAGATCG
Seq A exon
AAGAGTCACCGTGTGAGACCAAGGTGTGCCAGAACGGCGGGACGTGCCAGGTGGCAAACGGGACGGCGGTGTGCACGTGCCAGCCGGGGTACGCAGGAGGAGATTGCGAGACAG
Seq C2 exon
AGGTGAACGAGTGCGAGTCCAGCCCCTGCCTGAACGGAGGGCACTGTGTTGACCTGGTTGACAACTACACGTGTGTGTGCCTGGAGCCCTTCGTGGGACAGCGCTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'8-8,'8-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGATGAGTGTCTGTCTCA
R:
CTGTCTCACAGCGCTGTCC
Band lengths:
228-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]