RnoEX6041019 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100403433-100406512:+
Coord C1 exon
chr9:100403433-100403546
Coord A exon
chr9:100406159-100406272
Coord C2 exon
chr9:100406399-100406512
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTACTCTTCCTTGCTTGTAGCCC
3' ss Score
8.2
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGCTTCCCACCCATGTCAGAACGGTGGGACCTGCACCCACGGTGTCAACAGCTTCAGTTGCCAGTGCCCAGCCGGCTTCCAGGGACCCACCTGTGAATCAG
Seq A exon
CCCAGTCTCCGTGTGACAACAAAGTGTGTCAAAATGGTGGCCAGTGCCAGGCAGAGAGCAGCTCTGCAGTATGTGTGTGTCAAGCTGGATACACTGGGGCCACCTGTGAGACCG
Seq C2 exon
ATGTGGATGAATGCAGCTCTGACCCATGCCTAAATGGTGGATCGTGTGTTGACCTGGTTGGAAACTACAGCTGTATTTGTGTGGAGCCCTTTGAAGGACCTCAGTGCGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAACGAGTGTGCTTCCC
R:
GTCTCGCACTGAGGTCCTTCA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]