BtaEX0033932 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120768084-120769757:+
Coord C1 exon
chr3:120768084-120768197
Coord A exon
chr3:120769418-120769531
Coord C2 exon
chr3:120769644-120769757
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTGCACACTGCGCTCACAGCAG
3' ss Score
4.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTGAACGAGTGCGCTTCCCACCCGTGTCAGAACGGTGGGACCTGCACACACGGCGTCAACAGCTTCAGCTGCCAGTGCCCTGCCGGCTTCAGGGGACCCACCTGCGAGACAG
Seq A exon
CAGAGTCTCCGTGCGATGACAGAGAGTGTCAGAACGGCGGCTGGTGCCGGGCGGAGGGCGGCGCCGCGGCGTGCGTGTGCCCAGCCGGCTACACAGGGGCGGCCTGCGAGACAG
Seq C2 exon
ACGTGGACGAGTGCAGCTCTGACCCCTGCCTGAACGGAGGCTCGTGTGTCGACCTGGTGGGGAATTTCACCTGCCTGTGTGCAGAACCCTTCGAGGGACCTCGCTGTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132-'8-8,'8-5,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=76.9)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAACGAGTGCGCTTCC
R:
GTCTCACAGCGAGGTCCCTC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development