MmuEX6029379 @ mm10
Exon Skipping
Gene
ENSMUSG00000026532 | Spta1
Description
spectrin alpha, erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98385]
Coordinates
chr1:174241041-174243199:+
Coord C1 exon
chr1:174241041-174241153
Coord A exon
chr1:174242228-174242245
Coord C2 exon
chr1:174243148-174243199
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCCATCGTTTCCAGGGC
3' ss Score
9.89
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GAAAGGGAACAGGAACTACAGAAAGAAGAGGCTAGGCAGATCAAGAACTTTGAAATGTGCCAGGAGTTTGAACAAAATGCCAGTGCCTTCCTTCAGTGGATCCAGGAGACCAG
Seq A exon
GGCCTATTTTCTGGATGG
Seq C2 exon
ATCATTGCTCAAGGAAACAGGAACTCTGGAATCCCAACTTGAAGCAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026532-'52-61,'52-60,53-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(19.6=52.6)
A:
PF0043516=Spectrin=FE(5.9=100)
C2:
PF0043516=Spectrin=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGGAGTTTGAACAAAATGC
R:
TGCTTCAAGTTGGGATTCCAGA
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types