RnoEX0085700 @ rn6
Exon Skipping
Gene
ENSRNOG00000003537 | Spta1
Description
spectrin, alpha, erythrocytic 1 [Source:RGD Symbol;Acc:1305194]
Coordinates
chr13:92332806-92334907:+
Coord C1 exon
chr13:92332806-92332918
Coord A exon
chr13:92333965-92333982
Coord C2 exon
chr13:92334856-92334907
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATCCGGTCTACCATGCTCAGGGC
3' ss Score
4.53
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GAACGGGAGCAGGAGCTACAGAAAGAAGAGGCTAGGCAGATCAAGAATTTTGAAATGTGCCAGGAGTTTGAACAGAATGCCAGTGCCTTCCTTCAGTGGATCCAGGAGACCAG
Seq A exon
GGCTTATTTTCTGGATGG
Seq C2 exon
ATCGTTGCTCAAGGAAACAGGAACTCTGGAATCCCAACTTGAAGCAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003537-'46-52,'46-51,47-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(22.5=52.6)
A:
PF0043516=Spectrin=FE(5.9=100)
C2:
PF0043516=Spectrin=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGAAGAGGCTAGGCAGA
R:
TCCTGTTTCCTTGAGCAACGA
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]