BtaEX6014123 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000888 | SPTA1
Description
Bos taurus spectrin, alpha, erythrocytic 1 (elliptocytosis 2) (SPTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206588]
Coordinates
chr3:11198223-11200074:+
Coord C1 exon
chr3:11198223-11198335
Coord A exon
chr3:11199495-11199512
Coord C2 exon
chr3:11200023-11200074
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTCTGGACCTCCATATCCAGGGA
3' ss Score
5.97
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GAAAGAGAGCAGGAGTTGGAAAAGGAAGAGGCAAGACAGATCAAGAACTTTGAGATGTGCCAGGAATTTGAACAGAATGCCAGTGCCTTCCTTAATTGGATCTTGGAGACAAG
Seq A exon
GGACTATTTTCTGGATGG
Seq C2 exon
ATCTTTGCTGAAAGAAACAGGAACACTAGAATCCCAGCTGGAAGCAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000888-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=18.4),PF0043516=Spectrin=PU(19.6=52.6)
A:
PF0043516=Spectrin=FE(5.9=100)
C2:
PF0043516=Spectrin=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTTGAGATGTGCCAGGA
R:
CCAGCTGGGATTCTAGTGTTCC
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]