MmuEX6073805 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121837920-121840586:+
Coord C1 exon
chr3:121837920-121838182
Coord A exon
chr3:121839899-121840023
Coord C2 exon
chr3:121840488-121840586
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCATGGCTATTCTCCTACAGATT
3' ss Score
8.43
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTGGCGCTCAGCAGAAAAGAGAACAAGCCGGTCTCCGGCACCCTTGTTCGGCTCCCACTGAGAAGCTCAGGCAGTATGCCCAGGCCCCACATACCTGTTCCCCAGGACAAGTGGATCCTCCCAAGGGCCAACCTTCCCCAGAGCCAGAGGACCCCGGTGTCCCATTCAACACAGGTGCTCGGCTGATTCTTCAACATGTGCAGGCCCTGCTAGTCAAGCGATTCCATCACACCATCCGCAGCCGCAAGGACTTTGTGGCTCAG
Seq A exon
ATTGTTCTCCCTGCCACTTTCGTGTTCTTGGCTCTGATGCTTTCAATCATTGTGCCTCCGTTTGGTGAATTTCCAGCTTTGACTCTTCATCCCTGGATGTATGGGCATCAATATACCTTCTTCAG
Seq C2 exon
CATGGACGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTCTGAACAGGCCAGGCTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'37-39,'37-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCCAGGACAAGTGGAT
R:
TAGACAACGGTTGCCAAAGCC
Band lengths:
250-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: