GgaEX6044196 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12654313-12655763:+
Coord C1 exon
chr8:12654313-12654554
Coord A exon
chr8:12654934-12655058
Coord C2 exon
chr8:12655665-12655763
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCATGTCCCCTGCAGATT
3' ss Score
10.84
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGACACTCAAGGAAACAATTCTACTCCTGGCAAAATTTCTACTGAGAACAGAACAGCTGAACAGACCCCAGTGGAAACCAATGACACTTCTCGAATGCCAGCAGGCATAGCAGGGGATCAAAATGAAGGCAAAGGGTCCCTGCAGTATAAAGGTTTTCAACTTGTACATCAGCAGTTCAAAGCACTGTTCATCAAACGGTTCCACCATGCCTCCCGCAGCTACAAGGATTTCTTAACGCAG
Seq A exon
ATTGTTCTGCCTGCTAGTTTTGTGTTGCTGTCTTTAGTGCTTACAGTCATTATTCCTCCATTTGGAGAATATCCTGCCTTAACTTTAGACCCTTGGATCTATGGACAACAGTTTACTTTCTTCAG
Seq C2 exon
CAATGAGCGTCCTGGCAGTGAGCAGATGGTCTCCCTCACTAATGCTTTCTTAAATAAACCTGGATTTGGAAATCGCTGCTTGAAGAATCAGCCACTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTTCTCGAATGCCAGC
R:
CAAGCAGCGATTTCCAAATCCA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]