DreEX6095554 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28545408-28545975:+
Coord C1 exon
chr24:28545408-28545580
Coord A exon
chr24:28545669-28545793
Coord C2 exon
chr24:28545877-28545975
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGGTTTATTTTCTTTCTCAGATT
3' ss Score
10.32
5' ss Seq
TAGGTACAT
5' ss Score
4.36
Exon sequences
Seq C1 exon
ATACAGATAGATCACATGCTAACGGCCAGTCAAACTCTGCAAATGTAATCAGCAAAGAGGGCAGAGGATCCCAGCAGGTGAAGGGTTTTTTTCTGGTTGTGAAGCAGTTTTTCGCTCTTCTCATTAAGAGGTTTCATCACACCACGCGCTCCGGCAAAGACTTTCTCGCCCAG
Seq A exon
ATTGTGTTGCCTGCAAGCTTTGTGTTTATTTCTCTGATGTTCACGCTGATTGTTCCCCCATTCGGTGAATATCCCAGTCTTACTCTCAGTCCATGGATGTACGGCCGACAGTTCACCTTCTTTAG
Seq C2 exon
TAATGAGCAGATGCAAAGCCCAGACATGAGGTATTTTGGCGAAGTTCTTTTAAACAGACCTGGATTTGGGACCCGATGTATGGTGGATGAACCTCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGCCAGTCAAACTCTGC
R:
ATCCACCATACATCGGGTCCC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]