RnoEX0004882 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225739248-225741329:+
Coord C1 exon
chr2:225739248-225739510
Coord A exon
chr2:225740619-225740743
Coord C2 exon
chr2:225741231-225741329
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCATGGCTACCCTCCTACAGATT
3' ss Score
7.58
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTGGCACACAGCAGAAGAGAGAGCATACTGGTCTTCGGCATCCTTGTTCGGCTCCCGTCGAGAAGCACAGGCAGCATGCCCAGGCCTCACATACCTGTTCCCCAGGACAAGTGGATCCTCCCAAGGGCCAGCCTTCCCCAGAGCCAGAGGACCCCGGTATCCCATTCAACACAGGTGCTCGGCTGATCCTTCAGCATGTGCAGGCACTGCTGGTCAAGCGATTCCATCATGCTGTCCGCAGCCGCAAGGATTTTGTGGCTCAG
Seq A exon
ATTGTTCTCCCTGCCACTTTTGTGTTCTTGGCTCTGATGCTTTCCATCATCGTGCCTCCGTTTGGTGAATTCCCAGCTTTGACCCTTCACCCCTGGATGTATGGGCATCAATTTACCTTCTTCAG
Seq C2 exon
CATGGATGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTTTGAACAGGCCAGGTTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTCACATACCTGTTCCC
R:
ACCTGGCCTGTTCAAAAGGAC
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]