DreEX6026096 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15603937-15607066:+
Coord C1 exon
chr2:15603937-15604094
Coord A exon
chr2:15606741-15606865
Coord C2 exon
chr2:15606968-15607066
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTTTTTAATAGATT
3' ss Score
9.83
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGCTAACGGTGTGGGAGCCTCACTGGAGTCTGACAGCAGTGAAGGTAGAGCCTCCAGACAGGTTAAGGGCTTTAGTTTGGTCCTTAAGCAGTTCCACGCTCTTCTAGTCAAGAGGTTTCATCACGCCACACGCAGCCACAAAGACTTCCTAGCACAG
Seq A exon
ATTGTTTTGCCAGCCAGTTTTGTCCTCATTGCTCTGGTCTTCACTATGATTGTGCCACCATTCGGGGAGTACCCCTGTCTGACCCTCACACCATGGATGTATGGACCACAGTTTACCTTCATCAG
Seq C2 exon
TAATGAGCAACCGTCACATCCAAAGATGAAGCACTTCATTCAGACGCTGCTGAAGGACCCTGGCATGGGAACCCGCTGTATGGCCAATCAGCCCTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACGGTGTGGGAGCCTCA
R:
GATTGGCCATACAGCGGGTTC
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]