BtaEX6016505 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49647435-49649002:+
Coord C1 exon
chr3:49647435-49647694
Coord A exon
chr3:49648295-49648419
Coord C2 exon
chr3:49648904-49649002
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTATTGTCCCACAGATT
3' ss Score
10.02
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAGGCACTCAGCAGAAAAGAGAAAACATCAACCTTCGACACCCCTGTTCGGGTCCTAGCGAGAAGGCCGGACAGACTCCCCAGGGCTCCAGCAGCCACCCCAGAGAGCCAGCTGCTCACCCGGAGGGCCAGCCTCCACCGGAGCGGGAGGGACACAGCCGACTGAACTCAGGAGCTCGGCTTATTGTCCAGCACGTGCAGGCACTGCTGGTCAAGAGGTTCCAGCACACCATCCGCAGCCACAAGGACTTCCTGGCCCAG
Seq A exon
ATTGTGCTCCCGGCCACTTTTGTGTTTTTGGCTCTAATGCTTTCCCTCATCATCCCTCCTTTTGGTGAATATCCTGCTTTGACCCTTCACCCCTGGATGTATGGACAGCAGTACACCTTCTTCAG
Seq C2 exon
CATGGACCAGCTGGACAGTGAATGGCTCTCAGCACTTGCAGATGTCCTTGTGAATAAGCCAGGCTTTGGCAACCGCTGCCTGAAGGAAGAGTGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'35-28,'35-27,36-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTTCGACACCCCTGTTC
R:
CATTCACTGTCCAGCTGGTCC
Band lengths:
256-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]