MmuEX6101199 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52078310-52082803:+
Coord C1 exon
chr2:52078310-52078520
Coord A exon
chr2:52081226-52081318
Coord C2 exon
chr2:52082665-52082803
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTTTACTTTTGTTCCCAGAAA
3' ss Score
8.88
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCATTGGTTTCTTCATTGTAGGCTAATTGAACAAGCCCCAGTTCAAATGGGAGAAGAGTCTGTGAGGTGGGCCAAATTGGTCATACCATTAGTTGTTCACTCAGCACAAAAAGTACATTTGCGGGGAGCCACTGCTCTAGAGATGGGGATGCCATTGCTGCTTCAGAAACAACAAGAAATAGCCTTGATTACAGAGCACCTTATGACTACT
Seq A exon
AAATTAATCTCAGAACTCCAAAAACTATTTAAGAATAAAAATGAGACTTATGTGTTAAAACTATGGCCTTTGTTTGTCAAACTTCTTGGAAAG
Seq C2 exon
ACCTTGCACCGAAGTGGGAGTTTCATCAACTCTTTGTTACAGCTGGAAGAACTGGGCTTCCGTAGTGGAACACCCATGATTAAAAAAATCGCTTTCATTGCTTGGAAAAGCTTAATAGATAATTTTGCTTTAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(19.2=100)
A:
PF122313=Rif1_N=FE(8.2=100)
C2:
PF122313=Rif1_N=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGGCCAAATTGGTCAT
R:
GAAACTCCCACTTCGGTGCAA
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types