BtaEX6009855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44806641-44810921:-
Coord C1 exon
chr2:44810732-44810921
Coord A exon
chr2:44808895-44808987
Coord C2 exon
chr2:44806641-44806779
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGCTTTTGTTTTCAGAAA
3' ss Score
9.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACTAATTGAACAAGCCCCAGTTCAAATGGGAGAAGAGTCAATTAGGTGGGCAAAATTGGTCATACCTTTACTGGTTCATTCAGCCCAAAAAGTACATTTGCGGGGAGCCACTGCTCTAGAGATGGGAATGCCTTTGTTGCTTCAGAAACAGCAAGAAATAGCATCTATCACAGAGCAGCTTATGACTACC
Seq A exon
AAATTACTTTCAGAACTCCAGAAACTGTTTATGAGTAAAAATGAGACTTATGTGTTAAAATTGTGGCCTTTATTTGTCAAACTTCTTGGGAAG
Seq C2 exon
ACCTTGCATCGAAGTGGGAGTTTCATTAATTCTCTGTTACAGCTGGAAGAACTGGGATTTCGTAGTGGAGCACCCATGATTAAAAAAATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'7-7,'7-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(17.6=100)
A:
PF122313=Rif1_N=FE(8.4=100)
C2:
PF122313=Rif1_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAAAAGTACATTTGCGGG
R:
GGTGCTCCACTACGAAATCCC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]