GgaEX0018885 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36776394-36777872:+
Coord C1 exon
chr7:36776394-36776583
Coord A exon
chr7:36777546-36777638
Coord C2 exon
chr7:36777734-36777872
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCCTACCTACAGAAA
3' ss Score
10.39
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTAATGGAGCAGGCTCCAGCCCAGATGGGAGAAGAGGCTGTGAGGTGGGCAAAGCTGATCATCCCACTGGTCGTCCATTCAGCTCACAAAGTGCAGTTACGAGGTGCCACTGCGCTGGAGATAGGCATGCCACTGCTGCTTCAGAAACAGCAGGAGGTGGCAGCTGTAACTGAGCATCTGATGACCACG
Seq A exon
AAATTAATTTCGGAACTTCAGAAATTGTTTTCTACTAAAAACGAGACATATGTTTTAAAGCTGTGGCCGCTGTTTGTCAAGTTACTTGGGAAG
Seq C2 exon
ACTCTGCATCGTAGTGGCAGTTTCATCAATTCTTTGCTGCAGCTGGAGGAACTTGGATTCCGTAGTGGCTCACCTGTGGTCAAGAAAATTGCTTTCATTGCATGGAAGAGTCTAATAGATAATTTTGCTCTAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'8-10,'8-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(17.5=100)
A:
PF122313=Rif1_N=FE(8.4=100)
C2:
PF122313=Rif1_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCGTCCATTCAGCTCAC
R:
CCTCCAGCTGCAGCAAAGAAT
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]