RnoEX6016764 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37604862-37609462:+
Coord C1 exon
chr3:37604862-37605072
Coord A exon
chr3:37607956-37608048
Coord C2 exon
chr3:37609324-37609462
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTTTACTTTTGTTTACAGAAA
3' ss Score
9.18
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCATTGGTTTCTCCGTTGTAGGCTAATTGAACAAGCACCAGTTCAAATGGGAGAAGAGTCTGTGAGATGGGCCAAATTGGTCATACCATTGGTTGTTCACTCAGCACAAAAAGTACACTTGCGGGGAGCCACTGCGCTAGAAATGGGGATGCCACTGCTGCTTCAGAAACAACAAGAAATAGCCTTGATTACAGAGCACCTTATGACTACG
Seq A exon
AAATTAATCTCAGAACTCCAAAAGCTATTTATGAGTAAAAATGAGACTTATGTGTTAAAATTATGGCCTTTGTTTGTCAAACTTCTTGGAAAG
Seq C2 exon
ACATTGCACCGAAGTGGGAGTTTCATCAATTCTTTGTTACAGCTGGAAGAACTAGGCTTCCGTAGTGGGACACCCATGATTAAAAAAATAGCTTTCATTGCTTGGAAAAGCTTAATAGACAATTTTGCTTTAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(19.2=100)
A:
PF122313=Rif1_N=FE(8.2=100)
C2:
PF122313=Rif1_N=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTGTGAGATGGGCCAA
R:
GAAACTCCCACTTCGGTGCAA
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]