GgaEX0018885 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34649843-34652860:+
Coord C1 exon
chr7:34649843-34650032
Coord A exon
chr7:34650996-34651088
Coord C2 exon
chr7:34652709-34652860
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCCTACCTACAGAAA
3' ss Score
10.39
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTAATGGAGCAGGCTCCAGCCCAGATGGGAGAAGAGGCTGTGAGGTGGGCAAAGCTGATCATCCCACTGGTCGTCCATTCAGCTCACAAAGTGCAGTTACGAGGTGCCACTGCGCTGGAGATAGGCATGCCACTGCTGCTTCAGAAACAGCAGGAGGTGGCAGCTGTAACTGAGCATCTGATGACCACG
Seq A exon
AAATTAATTTCGGAACTTCAGAAATTGTTTTCTACTAAAAACGAGACATATGTTTTAAAGCTGTGGCCGCTGTTTGTCAAGTTACTTGGGAAG
Seq C2 exon
ATATTTTGTGCAGTGCTAAAAGGCTGAAATTGCTGATGCAGCCACTGAGCTCAATCCACGTGAGAACAGAGGCTTTGGCACTGACAAAGCTGGAGGTCTGGTGGTATCTACTCATGAGGCTGGGACCTCAGCTGCCTGCCAACTTTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-4/22=3-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(17.5=100)
A:
PF122313=Rif1_N=FE(8.4=100)
C2:
PF122313=Rif1_N=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCGTCCATTCAGCTCAC
R:
ATTGAGCTCAGTGGCTGCATC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]