DreEX0062195 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22976297-22977364:+
Coord C1 exon
chr9:22976297-22976486
Coord A exon
chr9:22976577-22976669
Coord C2 exon
chr9:22977226-22977364
Length
93 bp
Sequences
Splice sites
3' ss Seq
TACTGCTATGAATCCTGTAGGTG
3' ss Score
5.51
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTACTGGAGCAGGCCCCTGTTCCGATGGCTGTTGGTGCTGTTTGCTGGGCTAAACTTGTTATTCCTCTGGTGGTTCATTCGGCCAATAAAGTGCGTCTGCGAGCGGCAGCTGCCCTGGAGCTCGGCATGCCTCTTCTTCTGGAGAAACAGCAGGAAGTGGCAGCCATTGTTGAGCCAATGATGTCTTCT
Seq A exon
GTGCTCATCCCTGAAATGCAGAAGCTCTTTGCGTCTAAGAACGAGACAAACATGTTGAAACTCTGGCCTTTGTTTGTAAGACTTCTGGGCAAG
Seq C2 exon
TTACTCCACAAAGGCGGTGCTTTCATTAACTCCTTGCTGTATCTAGAGGAGCTGGGTTTCCGCAACTCTTCTCCTAATATTAAGAAGATTGCTTTCATAGCTTGGAAGAGCCTCATTGACAATTTTGCCCTTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'8-15,'8-14,9-15
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(18.1=100)
A:
PF122313=Rif1_N=FE(8.6=100)
C2:
PF122313=Rif1_N=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCCAATAAAGTGCGTCTG
R:
CGGAAACCCAGCTCCTCTAGA
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]