MmuEX6101360 @ mm9
Exon Skipping
Gene
ENSMUSG00000061136 | Prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1860512]
Coordinates
chr2:53011480-53012562:-
Coord C1 exon
chr2:53012498-53012562
Coord A exon
chr2:53011992-53012156
Coord C2 exon
chr2:53011480-53011588
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTATTATTATTCAGTGC
3' ss Score
6.51
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CGGGTGCCCTCCAATGCTTCATGGGAGCAGGCTATGAAAATGATCATAAATGATCCTCGGTACAG
Seq A exon
TGCTTTAGCAAAGCTGAGTGAGAAAAAGCAGGCCTTTAATGCCTATAAAGTCCAGACGGAGAAAGAGGAAAAAGAAGAAGCAAGATCAAAATACAAAGAAGCTAAGGAATCTTTTCAGCGTTTTCTTGAAAATCATGAGAAAATGACTTCCACAACCAGATACAA
Seq C2 exon
AAAAGCTGAGCAAATGTTTGGGGAGATGGAAGTTTGGAATGCAATTTCAGAGCGTGATCGTCTAGAAATCTATGAAGATGTTTTGTTCTTCCTTTCAAAGAAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061136-'24-16,'24-15,26-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.385 C2=0.027
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(42.0=100),PF0394210=DTW=FE(14.8=100)
A:
PF0184614=FF=PD(30.0=26.8),PF0184614=FF=PU(44.0=39.3)
C2:
PF0184614=FF=PD(54.0=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTCCAATGCTTCATGG
R:
TCTTTGAAAGGAAGAACAAAACATCT
Band lengths:
163-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: