BtaEX6009740 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048151 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:43628309-43629818:+
Coord C1 exon
chr2:43628309-43628373
Coord A exon
chr2:43628708-43628872
Coord C2 exon
chr2:43629710-43629818
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATGATTTTTTTTTTGTTTAGTGC
3' ss Score
7.53
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CGTGTACCATCTAATGCTTCATGGGAGCAAGCTATGAAAATGATCATTAATGATCCACGATATAG
Seq A exon
TGCTTTAGCAAAGTTGAGTGAAAAAAAGCAGGCCTTTAATGCTTATAAAGTCCAAACAGAGAAAGAAGAAAAAGAAGAAGCAAGATCCAAATACAAAGAGGCTAAGGAATCCTTTCAGCGTTTTCTTGAGAATCATGAAAAAATGACTTCCACAACTAGATACAA
Seq C2 exon
AAAAGCAGAGCAAATGTTTGGAGAGATGGAAGTCTGGAATGCAATATCAGAACGTGATCGTCTTGAAATCTATGAAGATGTTTTATTCTTTCTTTCAAAAAAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048151-'30-28,'30-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.357 C2=0.027
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(42.0=100)
A:
PF0184614=FF=PD(30.0=26.8),PF0184614=FF=PU(44.0=39.3)
C2:
PF0184614=FF=PD(54.0=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTACCATCTAATGCTTCATGG
R:
ACATCTTCATAGATTTCAAGACGATC
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]