GgaEX6043332 @ galGal4
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35056102-35057285:-
Coord C1 exon
chr7:35057221-35057285
Coord A exon
chr7:35056582-35056746
Coord C2 exon
chr7:35056102-35056210
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTTTGATACGAAGTGC
3' ss Score
2.58
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CGAGTACCATCCAATGCTTCTTGGGAGCAAGCCATGAAAATGATCATTAATGATCCGAGATACAG
Seq A exon
TGCTTTGGCAAAGTTGAGTGAAAAAAAGCAAGCCTTTAATGCTTACAAAGTTCAAACAGAAAAAGAAGAGAAAGAAGAAGCAAGATCAAAATACAAAGAAGCTAAAGAGTCCTTCCAGCGTTTTCTGGAGAACCACGAGAAGATGACATCCACAACACGATACAA
Seq C2 exon
AAAAGCTGAACAAATGTTTGGGGAGATGGAAGTCTGGAATGCAATCTCTGAGCGTGATCGCCTGGAAATTTATGAAGATGTCTTGTTTTTTCTCTCTAAGAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526-'19-23,'19-20,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.375 C2=0.027
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(42.0=100)
A:
PF0184614=FF=PD(30.0=26.8),PF0184614=FF=PU(44.0=39.3)
C2:
PF0184614=FF=PD(54.0=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCATCCAATGCTTCTTGGG
R:
AGACATCTTCATAAATTTCCAGGCGA
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]