DreEX6034942 @ danRer10
Exon Skipping
Gene
ENSDARG00000058467 | prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-274]
Coordinates
chr9:4730904-4736447:+
Coord C1 exon
chr9:4730904-4730968
Coord A exon
chr9:4731079-4731243
Coord C2 exon
chr9:4736339-4736447
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGTGTGTGTGCAGTGC
3' ss Score
9.59
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGCGTTTCTTCCAATGCATCATGGGAGCAGGCAATGAAGCTGATAATTAATGACCCTCGTTACAG
Seq A exon
TGCTCTGCCAAAGCTCAGTGAGAAGAAACAGGCGTTCAATGCTTATAAAGTCCAGACAGAGAAAGAGGAAAAGGAAGAAGCCAGAATAAAATACAAGGAGTCTAAAGAGACTTTCCAACGCTTCCTGGAGAACCACGAGAAGATGACGTCAACCACACGATACAA
Seq C2 exon
GAAAGCAGAGCAGATGTTTGGAGATCAAGAGGTTTGGTCGTGTGTTCCAGAGAGAGACCGGCTGGAGATCTATGAAGATGTGCTCTTTTATTTGGCAAAGAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058467-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.268 C2=0.027
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(42.0=100)
A:
PF0184614=FF=PD(30.0=26.8),PF0184614=FF=PU(44.0=39.3)
C2:
PF0184614=FF=PD(54.0=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTTTCTTCCAATGCATCA
R:
TCTTTCTTTGCCAAATAAAAGAGCAC
Band lengths:
170-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]