MmuINT0043538 @ mm10
Intron Retention
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84612532-84613089:-
Coord C1 exon
chr2:84612936-84613089
Coord A exon
chr2:84612550-84612935
Coord C2 exon
chr2:84612532-84612549
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTTGGTGATGCACTGGAAGATG
3' ss Score
-0.57
Exon sequences
Seq C1 exon
CTTGTGGAGAATTGTGTTTGCCTCCTCCGGAACTTATCATACCAAGTTCATCGTGAAATCCCACAGGCAGAGCGTTACCAGGAGGCCCTTCCTACTGTGGCTAACAGTACTGGGCCACACGCTGCCAGTTGCTTTGGAGCCAAGAAGGGCAAAG
Seq A exon
GTGAGTTTTGCTTAGTTCCAGTACTTTAATATGGGACAAGAGGAACACTTAGCTTTATAGGGATTTAATAAATAGCGTGGAAGTCTCCCTAGTAGAGTTGTGTCCTTTTGCTCTGTTGCTGCTCCTCCCTTGTTCTACATGCCTTGACGGGTGGTAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGTGTGAGGATGGTGACGATTGTTAGTGTATTGGCATCTGGGGCAGTGAAGGACAAGAACTCAGCTACACCGGGGTCTTCCTCCCTATTCCTCCTCCTTCTCTGCTTTCTTGTGTACTTGCCCATGATCCTGTTGACATCTTTCTCCTGCGTTTTCTTCCTTCATTTCTCTCCTCGCTTTCCACCTTGGTGATGCACTGGAAG
Seq C2 exon
ATGAGTGGTTCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101:ENSMUST00000111691:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types