RnoEX0078264 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44076420-44082893:+
Coord C1 exon
chr1:44076420-44076532
Coord A exon
chr1:44077434-44077618
Coord C2 exon
chr1:44082793-44082893
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTGTAGGTCACCAAGAAA
3' ss Score
-6.93
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
Seq A exon
AAAACGGAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCATAGGAAGAGGTCTCGCTCCCGCTCCAGAGAGAGAAAGAGAAAATCCTCACGTTCCTATTCAAGTGAACGCAGAGCCAGGGAAAGGGAGAAAGAACGCCAAAAAAAGGGCTTGCCTCCTGTCAGATCGAAAACGCTAAGTG
Seq C2 exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'21-20,'21-19,22-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.924 C2=0.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PU(14.7=36.8)
A:
PF086487=DUF1777=FE(68.4=100)
C2:
PF086487=DUF1777=PD(15.8=44.1),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATGGATATTGATGAAGGGCAAGA
R:
ATGGATTCGATTTGCCCAAACT
Band lengths:
210-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]