BtaEX6050098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92853797-92857762:+
Coord C1 exon
chr9:92853797-92853909
Coord A exon
chr9:92855320-92855513
Coord C2 exon
chr9:92857662-92857762
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGGTTACTGTTAGATC
3' ss Score
7.22
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GATATGGATATAGATGAAGTGCAAGATGCAGTGGAAGAGGAGATCTTTGAACAGGAAGCAAAGAAAGTGGCTGTTCGTTCAAGATCAAGAACACACTCCCGATCTCGTTCAAG
Seq A exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGATCTGGTTCTCGAAAGCGTAAGCACAGAAAGCGATCACGCTCCCGCTCTAGAGAAAGAAAAAGGAAATCATCACGTTCATACTCAAGTGAAAGGAGAGCTAGAGAAAGGGAGAAAGAACGGCAGAAGAAGGGATTACCTCCAATTAGATCTAAAACATTAAGTG
Seq C2 exon
TATGCAGTACTACTCTGTGGGTCGGTCAGGTGGACAAGAAGGCAACACAGCAGGATTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAGTCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.917 C2=0.015
Domain overlap (PFAM):
C1:
PF100254=DUF2267=PD(17.9=65.8),PF086487=DUF1777=PU(14.6=36.8)
A:
PF064956=Transformer=FE(46.1=100)
C2:
PF064956=Transformer=FE(23.4=100),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATAGATGAAGTGCAAGATGC
R:
ACTCAATCTGTCCAAACTCTTCA
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]