DreEX6056183 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48853915-48854645:+
Coord C1 exon
chr17:48853915-48854024
Coord A exon
chr17:48854111-48854304
Coord C2 exon
chr17:48854545-48854645
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGATTGCACTGTATCTCCAGGTC
3' ss Score
6.24
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GACATGGATATTGATGAGGGACAGGATGTGGTCGATGAGGAGCTCTTTGAGACGGATGAGAAGAAAACCAGCAGCACCCGTTCAAGGACGCGCTCAAGATCCCGCTCTAG
Seq A exon
GTCACCTAAGAGGAGGAGGTCAAGATCACGCTCTGGGTCTCGGAAGCGGAAACACAGAAAACGCTCAAGGTCTCGGTCAAGGGACCGAAAGAGGAAGTCCTCCCGTTCTTATTCCAGTGAGCGAAGAGCACGGGAGAGAGAAAAAGACCGGCAGAAAAAAGGGCTTCCTCCAATCCGCTCGAGGGTTCTCAGTG
Seq C2 exon
TTTGCAGCACTACTCTATGGGTTGGTCAAGTGGACAAGAAAGCCACCCAACAGGATCTCACAAACCTCTTCGAAGAGTTTGGCCAGATTGAATCTATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'9-14,'9-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.909 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(25.7=100)
A:
PF064956=Transformer=FE(46.4=100)
C2:
PF064956=Transformer=PD(21.4=88.2),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGATATTGATGAGGGACAGG
R:
TTGATAGATTCAATCTGGCCAAACT
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]