MmuEX0041110 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3177611-3185164:+
Coord C1 exon
chr17:3177611-3177723
Coord A exon
chr17:3178155-3178348
Coord C2 exon
chr17:3185064-3185164
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAAATAATTATTTTTTGTAGGTC
3' ss Score
6.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
Seq A exon
GTCACCAAGAAAACGAAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAGCACAGGAAGCGGTCTCGGTCCCACTCGAGAGAGAAAAAGAGAAAAGCCTCACGCTCCTACTCCAGTGAGCGCAGAGCCAGGGAAAGGGAGAAAGAGCGCCAGAAAAAGGGCTTGCCTCCTGTCAGGTCAAAAACACTAAGTG
Seq C2 exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAATTTGGACAAATTGAATCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'19-25,'19-24,20-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.924 C2=0.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PU(15.3=39.5)
A:
PF086487=DUF1777=FE(66.3=100)
C2:
PF086487=DUF1777=PD(17.3=50.0),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATATGGATATTGATGAAGGGCAAGA
R:
ATGGATTCAATTTGTCCAAATTCCT
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: