GgaEX1050993 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52245463-52248257:+
Coord C1 exon
chr3:52245463-52245575
Coord A exon
chr3:52246046-52246239
Coord C2 exon
chr3:52248157-52248257
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGAAGTTAAGTATTTTTTAGGTC
3' ss Score
2.1
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GATATGGACATAGATGAAGGACAGGATGTTGCTGAAGAAGAGATTTTTGAACAAGAAGAAAAGAAATCTGCTGTTCGTTCAAGATCAAGAACGCGTTCAAGATCTCGTTCAAG
Seq A exon
GTCACCAAGAAAACGAAGGTCTAGATCACGATCTGGTTCTCGTAAGCGTAAACACAGAAAACGTTCACGCTCAAGATCAAGAGAAAGGAAGAGAAAGTCATCTCGGTCCTACTCCAGTGAAAGAAGGGCTAGGGAAAGGGAAAAAGAACGTCAGAAAAAGGGATTGCCTCCAATACGGTCAAAAACACTAAGTG
Seq C2 exon
TTTGCAGCACTACTCTTTGGGTAGGCCAAGTAGACAAGAAGGCTACACAGCAAGATTTGACCAACTTATTTGAAGAATTTGGACAAATAGAATCTATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'13-20,'13-19,14-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.924 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATAGATGAAGGACAGGA
R:
TGTCCAAATTCTTCAAATAAGTTGGT
Band lengths:
194-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]