HsaEX6050107 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155129820-155136950:+
Coord C1 exon
chr6:155129820-155129932
Coord A exon
chr6:155131149-155131342
Coord C2 exon
chr6:155136850-155136950
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAAATGAAAATTTTTTGTAGATC
3' ss Score
3.96
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAGAAAGTGGCGGTTCGCTCAAGATCAAGAACACATTCACGATCTCGTTCAAG
Seq A exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGGTCTGGCTCTAGAAAGCGTAAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAAGAGGAAATCATCACGGTCGTATTCAAGTGAAAGGAGAGCCAGAGAAAGGGAGAAAGAACGACAGAAAAAGGGATTACCTCCAATTAGATCTAAAACACTAAGTG
Seq C2 exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.924 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=PU(19.7=71.1),PF086487=DUF1777=PU(14.9=36.8)
A:
PF064956=Transformer=FE(47.4=100),PF086487=DUF1777=FE(69.1=100)
C2:
PF064956=Transformer=FE(24.1=100),PF086487=DUF1777=PD(14.9=41.2),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATAGATGAAGGGCAAGATGG
R:
ATTAATGGATTCAATCTGTCCAAACT
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)