HsaEX6050107 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154808686-154815816:+
Coord C1 exon
chr6:154808686-154808798
Coord A exon
chr6:154810015-154810208
Coord C2 exon
chr6:154815716-154815816
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAAATGAAAATTTTTTGTAGATC
3' ss Score
3.96
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAGAAAGTGGCGGTTCGCTCAAGATCAAGAACACATTCACGATCTCGTTCAAG
Seq A exon
ATCACCAAGAAAACGAAGGTCTAGGTCACGGTCTGGCTCTAGAAAGCGTAAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAAGAGGAAATCATCACGGTCGTATTCAAGTGAAAGGAGAGCCAGAGAAAGGGAGAAAGAACGACAGAAAAAGGGATTACCTCCAATTAGATCTAAAACACTAAGTG
Seq C2 exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'37-46,'37-41,39-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.924 C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=PU(19.7=71.1)
A:
PF064956=Transformer=FE(47.4=100)
C2:
PF064956=Transformer=FE(24.1=100),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATAGATGAAGGGCAAGATGG
R:
ATTAATGGATTCAATCTGTCCAAACT
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains