RnoINT0119973 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7739130-7745329:-
Coord C1 exon
chr14:7745273-7745329
Coord A exon
chr14:7739220-7745272
Coord C2 exon
chr14:7739130-7739219
Length
6053 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTATTGAAAACTCTTACTAGATT
3' ss Score
3.32
Exon sequences
Seq C1 exon
GAATGAGTTTGCCTAGTTCTGGAAAGTCTTCATCCCAAGTACCCTTTAAAGACAATG
Seq A exon
GTAGGTGCACAAGCTGTTCTCATTTCCATCCTACCCTCTCTGTTCTCGTATCGTACGTACGCAGTGATCTGGGCGTGAGTGTGGAGACCGTCCCACGCCAAGGGTTTAGGCCCGCGTCACAGTAAAGGGGGCGAGGTGTGTCCGCATCACAGCAGTGCATTGGCACCTGTGGCTTCGCTTCTGCTGACCAAGGAAATGAATGAGAGGTTAGGGAGGGACATTGCTGGGAAGGTTAAGATAGCAGTCGGCGGAGAGAGAGTCTTGAGGTAATTCGAAGGGGATGCTTGATAATCCTTTGTTGTTGTTGCTGTTGCTGCTGTTGTTGTTGTTTCAAATACCAAGGGAGTATACTCACTGTCCTGACAGGAGGGTTTTCTCACAACAGCAGAGCTGAGCATTTCAGACCAAGGGCACAGCCTGATTAGAGGCTTGGAAATACAAGCAGCACTAGTAGAAGCCCATGGGGCAGCATGAGGTCGGACGACACACTGGGAGCAGTTCTGAGTCTCATCCTGAGTGTTAGAACTGAAGGCTTTAAACATGAGTCTTCTCAACTCAGACCCCGAGAAGCAAAGCTGGAGGGGAGGCCACATGTGGACAGTGACTTCAGTCTGTAGTCAGAGTTTTTATCATTTAAAGAATGTTTATTGCATCTTTCCAACAGCTTTATGGGTAGGAAAAAAAATACTCCATTAATATCTCTCTGTACAATACTTTATTCCAAGTCTTACCCTTAAATTCTGAAAGCTGAATTCCTGAAAAGCCTGGTGAGAGTGAAGAAGGCTGGCAATGAAAGTTGGTGCTGTCATTGGCTGGACAGACAGCTCAGTGGTCAGAGCACTTGCACTTGCAGAGGACCTGGATTTGGTTAATTTTAGTTCTAATTTTCCTGATAGGGAAGGCAAAAAAGGAAATTGTGACGTTAAACCATATAGAACTGGTGCTGTGATGTGAGACTGGACCATGTAGGATTGTGCTGTGAGGTGAGGTTGGACCATATAGAATTGTGCTGTCAGGTGAGGCTGGACCATATAGAATTGTGTTGTGAGGTGAGGCTGGACCATATAGAATTGTGCTTTTGTGACCACGGCTTCCAGTGTGCTCACACGTTTCATTCTCCTGCAGAAATCAGTCAGCGTGCTAGTTACTCAAGAGAGTGAAGTCTGTGTTGAAGATAGTTGCTTCAGAGACTGTAACTGTAGATGCTGTCTTCAGTACTCTCGGGGAATGAAGAGGGGGCAAGGCTTCTTCGTATTTTCCTTCCCCGTTACCAATCCTCAAAACAGCTGGAGCCGTAAGAGTCCAACTAAGCAAGCATGTGCGTGGGCCAGGGGCCGGGTGCAGCCGGCTGGCGATGAGGCTTCTTACCTGGACTGAGTTTGGCAATTGTGCATCTTGCATAACTTCACTTCAGCTCGCCCACAGTGGTACTAATATGCATTAACAGCCCCCGAGGGCTTGCTGTGCCCTCCCACCATTCTGACTTCCAATGACCTCTTGTATCCTGGCTGGTGGGCATTGACGCCACGTCCCTTTCACAAATGAGAGACCAAAGATGAGCTCTGCAGAAGGCTGTAGAGCGGGAGAGCTGCCGAGCCATCGTCTGATGCAGAGTCTGTTCCAGTCCACTCCAAACCCATCCCAGCATGATACTGGGAACTGTTAGTAAAAGGGCTAAGCTCTGGGAAGGCTTGCTGGTAGTCGCCCTGTGATGATAGCACACATGCGTTCTGAGTTAAATTCTCATGGACAGGGACGTGAATGTGTACCAACTGTCCATGAACTGCAAGAATTTTTTTCCCCTTTAAATCTCTAGAGCCGCCTTCTCACCAGCCCGCCTGGCTGTGGGGGGACTCAGGCAGTCTTTCTCTTTACAATTCCTTCTGAACCTGCCCAAGCAGATAGGATTAAAACTTTATGGGGAATTAAAATTTCTGCTGCTGACGGTGGTGGTGCATGTCTTTAATCCCAGCATTTGGGAGGCTAAGGCAGGCAGCTCTGTGTGAATTTCAGGCCAGTCTGATCTACAGAGCAAGTTCCAAGACAACCAGGCCACACAGAGAAGCCCAGTCTTGGAAAAATAAAAAATAAAAAACAAACCAAAACCAAACAAACCAAAACAATGACAACAAAAACCAACCACCAGCAACAATAAAGAAATAAAAGTACCTCTGGTCCAGAGTAACAGAATGCAGGCCCCGAAATTACTTCATCTAATTTCAATGCTAATTATCATGGCCAGTGCCAGGTAATACTGTGAGACTACATAGTGAGACCCTAGCTCAAGACACACAAGAAACATCCTAACAGAGCAAGAACCTGGTTTTAGACCAGTGTGGTGCCACTGCCCGTTAGCCTCAAGGCGTGAGCTGGGTCACCGCCCTGGAGTGACCAGCAGTGTCTTCTCACCCAGTCTAAGCCTGAGGCTGCCCAATACGGGCTCAGGCATAGTCTACAACTCAAAGAAAGCACTTCTTGCCATGCTTAGAAAGTAGTAGAAATCTTGCTTACTTACTAAACCCTGCCCCATTTTCTTGAAGATGTGATCTCCAGGACAGTTCTTAGCCTTGTCGAGGACAGTTCCACTGTTTCTAGGTAATGCCAGGCAGGCTGTCTGAAGGCCACACCACATTCACAGGAGTCCTGCGAGACAAGCAGGTCCGAGTTCAGAGGCCTCACACACAGCTCCGTCATTCTTTCCCACCTGGGAATGGCACAGGCTTGCTTTACGTAAAGAGCTGGACATTTCAGGTCAAGGTTTTCGTTTTCACTTCCAGGTAACTGAAAAGACTCTCCCAGTACAGTACATATTGGGAAACAAGAATCATTTCCAGGGCCTTGGAATGAGTCTGCCTGATAACTGAACTTGTGGTGGTGTCGTTGAAGGCCTCAGAAATGTCTTTGTAATTAAAGTGTCTACCTCACAGAGATTCTCCAACCCTCTTCCTTGAGTACACTGTAGCTGTCTTCAGAAGAGAGCATCGGATCCCGTTACAGATAGTTGTGAGCCACCATGCAGTTGCTGGGATCTGAACTCAGGAACTCCGGAAGAGCAGTCAGTGCTCTTAACCGCTCAGCCATCTCTCCAGCCCCTGTCCTTGAATAGACCTATGGGCAGGTAACTTGAAATTTGTATAGATGCTCCCTCAGGAACTATTCCCCATTAAGAAAAAATACAAGTAACAAAGTATTTCGAGCATCTGTGTGCAGAGAACTGAGGAAAGACACTGCTGGTGTTTATGCCAAAGTACGGGCACCTGCATGCGATTCCCACCGGCTGCCCTGACCCTCTGACTGGGGACAGAACTGTCATGTGGATGCTGGGGAACATTCTACCCAGTTGGTCACCTCCTTGTTACCCAAGGAGAAGCTGTCACCCACTGCTGTCACTGCTGTCAAGGCTGCAAAGTACTTCCTAGGACCGCTCCGTGGACGTGACACCAGCTTTGGGAACGCAGCCATTTGATTGACATTATATTTTTCCTTCAATTATAAACTTGGGTATTTTTCCGACATCATTAGCAGTGGTCTGGCACCATCACACTTGCTGTCCTAGAGCTCTCAGAGCCGGAGCCAATGCTTGTTTATTCCCCCCAAAGCACCTGATGATAAACAGGGACAGGAAAGCTCCCCAGCGCACGGCTGAAGAACAGTAGGATAACTAATAGAAGCAAGAGCTGAAGTCACAGTCAGGAACCTGAATGAGCCAGCCCTGTTGCCTCTAATTAGGGAGAATGTGTGAACGTGCATGTGCTCGCAGACAGACAGACGCACACACACAGTTAACTAGATGAATATTATAAAGGCTTAATCCTGTTAACACCCTATTAGAAATAGAAATGAAGAGACTTGTCTTCTTCCTCTCTGAAAGAAGCCTTCGTGACCTGTCACAGACACCTCATGAGAGCAATCATAAAGCTGAGGAGAGCAGAGAGACCATGACCCAGGTGGACTGTTGCCTTGACAACTGTGAGCCGAGTTTCCATTCACAACCCAGCCAGGTTAAACGTCTATCTGTTCTTAACCAACCAGAGAGTAACCGCACCTCCACCTAGTCTTAATTTTTATTTTATTTTATCCTGCCCTTACTGACGAAGAATCTGACTTCCCACTAAGTGTGTGCATTGGGACATAACAAGTACCATGGGGTAATGAACTGCATCAGTTCCTAAATCTCCCAATCTCTGGGCACTAAGAGTTTTAAATCGGAAACTTGGGGAGGGTGTGAAAAGTTCAAGCCACTGTCACCATCTAACTGCTTTGCAGTACACTTTAATTATATCTGTCTTTCCCCTAACCGCCTCAATTAAATCCTTTTTAAATTTCAGCTATTAACATGGCCTCACTTCTGTTTGCTTTGTTTTTTATGGGTCCTCTTTTCCATTGTTTTACGTCTGTTCCAGATGAACGACTGGTGCTCGTTACCTATTTCAGGAAGAGTGAGTTGAGAGCGTGTAGACAATGCTGTAGAAGCTGCCCATGAAACAGACAGTGCACTTTTCCTAGTACTACCTGTTAAAGGTGGAGTCTCGAAACCTTATCCAGTAATGTGGTGTGTAATTTCACCAAAACGTCATTGGCGATACCACATTGCTATGACTGTTAGCGATCGCCAGTGAGTTCCAGTTCCGGCAGAGTGTACGAGCCACAGAGAGCATCTAATTTGTATTAAGCGAGACACGAGGCTAAATTCACTGCTGATAGGAAATGAGGGTTGTCTCCTCAGAGTAACAGAACTCGTTTCTGGGCGTTGAGGCTTGCTTCTTACTACACACCGTGTGCCAGTTACCAGCTTATTAACGCTGATTGATACCCTTGCATGGTCTTAAATGTTGAAAACATACAGCCAAAAAATGTCTGCGTTGACAGTGGTTCTGGTTATTAGAAGAATGTGTGTGGACGTTTAAGAAAACTCCAGTTTATGCTTTAGTTAAGCCAGAATGTCTGGGTTTGGGTTTTGGATTTGGTTTTTTTTTTTTTCTGTTTTTTGTTTTTTTGTTTTCAAAAAGCATCAATACGCTTAAGAACACTGTAGATGTAATTTGGAATTTTAATTTATAAAAGTAGCTGGTTTAAAACTCACCACCATGACCACCTTCTTATGCAGACCAGTCAGCATTAACGACTCATTTCTGTATGCAAATGCCTGTGTGTCTGTGTGCTCAAATTGTCGAATGTGGCAGTGTCTTGATTAATGTGACGATTCAGTGTTTTATGTACTGGTTCAATTAAGATCTCTGGAAACAATAAAAAAAGACAAGGAGGGATTAGAAAAAAGCAAATCATAGCTCAGTTGTTGAAATTCACTTAGCCAATTGAGTTAACTTCTCTGAACTAAGTATGTTTTAGTCATAATTCTGGATGGTGGATATCAGCTCTCAGATTGGAAACGTTAAACTGTTTATGTCCATCTGCAAACTGGGGTCGGAAGTCTTCGGAATTTAGACATGCTAGGCAAGTTATTTTATATGAAATCCAAGCAAGCAGAGAGAGGATTTTAAAAGCTGAATCCAGTTTATCTTCTTACTCTTCTGTTCAGGAACTTACTAGTAATATCTCGCTGATTTATAAATAAGGTGTCAAACATACGGGGGGGGGGTTCTTTTTCACAGAGTTCTCTCTTTCTTATGAGTCTGAGTGTCTTTACCTGCATGTACGTTAGCACGCAGTGACCCCAACAGCTGCCGTGTGGGTGCTAGGAACCGAGCCCAGGCTCTCTGCAAGAGCAACACCGTACTCTTTAGTATTTGTCCATCCCCCCAGGCCCTGAGAGAGAATTTTATTGTGATAATTATCAAAGTGAACCAATCTCTTATGATGCAACAGAAAGATGAAATCAGGAAACCTGTGTCTGGAGGCCCGGTGCCCTGCAGTGGCGGCCGGCTGTTAGCATGGCCCGCAGCATCCGTGCCCTGGTGTCGATTAATAATATTGTTCGCTACTTTTTAAATCAGAACAAGCTGATAATCTAGATGCCTAAATAAATTTATTTATTTATTTATTTAATTAATTATTTATTTATTTTGCTTGTTTTTATTGAAAACTCTTACTAG
Seq C2 exon
ATTCATTGCACAAAAGATGGAGCACTGTCTCTTCACCAGAAAGGGAGATCACACTGGTGAACCTGAAGAAAGACTTGAAGCATGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(14.3=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]