BtaEX0009248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55309212-55314479:+
Coord C1 exon
chr17:55309212-55309928
Coord A exon
chr17:55312145-55312261
Coord C2 exon
chr17:55314422-55314479
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATGTAACTCTGTCTGGTAGGCT
3' ss Score
6.02
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCATTTTGGAGCCCGGGAAGAAATGCATCAGAAGGAGTTAAAGGTTTTGCAGGCCGCCACAGAGAAGCTTTCCAAAGAGAATGAGTCCCTGAAAAGCAAGCTCGACCACGCCAACAAGGAGAATTCAGACGTGATCGCCCTGTGGAAGTCTAAGCTGGAGACAGCCATCGCGTCCCACCAGCAGGCCATGGAGGAGCTGAAGGTGTCCTTCAGCAAGGGGGTCGGCACCGAGACAGCCGAATTCGCCGAGTTAAAAACGCAGATAGAGAAAATGAGACTGGACTACCAGCAGGAAATAGAAAATCTGCAGAACAAGCAAGACTCAGAAAGGTCTGCTCACACGAAAGAGCTCGAAGCCCTAAGGGCTAAGCTGATGCAGGTCATTAAAGAGAAGGAGAACAGTCTGGAAGCCATCCAGTCGAAGTTGGACAAAGCGGAAGAGCAGCACCTAGTGGAAATGGAGGACACCTTAAACAAACTGCAGGAAGCCGAGCTAAAG
Seq A exon
GCTAGTAGCATCACCAAAGAGCTGCAGGGAAAAGAGCTAATGCTTAATAACCTTCAGGAAAACTTGAGTGAAGTCAGTCAAGTGAAAGAGGCTTTGGAAAAAGAACTGCAGACTTTG
Seq C2 exon
AAAGAAAAGTTTGCTGATGCTTCAGAGGAGGCAGTCTCTTTTCAGAGAAGTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.231 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTACCAGCAGGAAATAGA
R:
AGACTGCCTCCTCTGAAGCAT
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development