DreEX0022124 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66535258-66539997:-
Coord C1 exon
chr5:66539107-66539997
Coord A exon
chr5:66535762-66535857
Coord C2 exon
chr5:66535258-66535315
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTGGTTCACCGTGCTTTAGGTC
3' ss Score
6.4
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGGCTTCACATCAGCAAGCTTTGGAGGAGCTCAAAACCTCCCGTGAAGCAAGCAAAGCTGAATTGTCGGATGCTCTGGAACGGCTAAAATCAACACATAAGCTGGAGTTGGAGGAGCTCGCTAAGAAACATTCCTCTGAAGCAGCGGGATGGGTGGGTGAAGGTATGGAGCATAAAGCACAGCTTCTGAAAGTCGCCGAAGAGAATGAACGGCAGGTAGAAATGCTCCGCAGCAGTCTGGAGAAGGCCGAGGAGCAGCACCTAGTGGAGCTGGAGGACGCCATGGGGAAGCTTCATGCCGCGGAGCTCAGGGTCAAAGAGCTGGAGGACAGCGGAGTCAAGATAAGCGAGCAGTTAAAGGAAAAGGTGCAAGAAGCTCTCGAGCAAAGTGAAGCTCTTCAGTCTCTGCAGACACAGCACAGTCAAGGAAACCAGGAGATGCAGAGGTTATTGAGCCAAGTGGAGGAGGCGAAAAGCAAAGCCAGATCTCAGGAAGAAAAG
Seq A exon
GTCACTGAGTTGAATTCAGTACTAGAGGTTAAACAGCAGGAGTTGAGTGGCCTGTTGCAGGAAAAGAGCTCTTTGGAGCAAGAAGTTAGCCTGCTG
Seq C2 exon
AAGCAGAATCTTGAAAAAACGACGAACGATCAAGCCAAATCATCTCAGACAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=0.281 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGCAAGAAGCTCTCGAG
R:
TGGCTTGATCGTTCGTCGTTT
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]