GgaEX0006009 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5833114-5836572:-
Coord C1 exon
chr15:5835856-5836572
Coord A exon
chr15:5834150-5834266
Coord C2 exon
chr15:5833114-5833171
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTAACCATCTTTGTTAGGTT
3' ss Score
5.71
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGAAGTTTGAAAGCAGTGAAGAAGCGCTGCGGAAAGAGATCAAAACACTTTCAGCTTCAAATGAGAGAATGGGAAAAGAAAACGAATCATTGAAAACTAAGCTTGATCATGCCAACAAAGAGAATTCAGACGTAATAGAGCTGTGGAAATCGAAGCTGGAATCTGCAATTGCTTCCCATCAGCAAGCAATGGAAGAACTGAAAGTTTCTTTCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGACTACGAAAATGAAATGTCAAATCTAAAACTGAAGCAGGAAAATGAAAAATCTCAGCATTTAAAGGAGATTGAAGCACTGAAGGCAAAATTGCTGGAGGTCACAGAGGAGAAAGAGCAAACCCTGGAAAACCTGAAGGCCAAACTGGAAAGTGTGGAAGATCAGCATCTAGTAGAAATGGAAGACACTTTAAACAAATTACAGGAAGCTGAAATAAAG
Seq A exon
GTTAGTAATCTGACCAAAGAACTGCAGGGCAAAGAGCAAAAGCTTCTTGACCTTGAGAAAAATTTGAGTGCAGTAAATCAAGTTAAAGATTCTTTGGAAAAGGAACTTCAACTTTTG
Seq C2 exon
AAAGAAAAATTTACTAGTGCAGTTGATGGAGCAGAAAATGCTCAACGCGCTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX2-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.077 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAAAATGAAAAATCTCAGCA
R:
CTTGCATAGCGCGTTGAGC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]