GgaEX0006009 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5888956-5892544:-
Coord C1 exon
chr15:5891805-5892544
Coord A exon
chr15:5890309-5890425
Coord C2 exon
chr15:5888956-5889039
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTAACCATCTTTGTTAGGTT
3' ss Score
5.71
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGACTACGAAAATGAAATGTCAAATCTAAAACTGAAGCAGGAAAATGAAAAATCTCAGCATTTAAAGGAGATTGAAGCACTGAAGGCAAAATTGCTGGAGGTCACAGAGGAGAAAGAGCAAACCCTGGAAAACCTGAAGGCCAAACTGGAAAGTGTGGAAGATCAGCATCTAGTAGAAATGGAAGACACTTTAAACAAATTACAGGAAGCTGAAATAAAGGTAAAGGAGCTAGATGTACTGCAAGCCAAGTGCAATGAACAAACCAAACTTATTGGTAGTCTTACACAACAGATCAGAGCTTCTGAAGAAAAGCTTTTGGACCTTGCTGCACTTCAGAAAGCCAATTCTGAAGGTAAATTGGAAATCCAGAAACTTAGCGAGCAGCTTCAGGCAGCTGAGAAACAGATACAGAATTTAGAGACTGAAAAG
Seq A exon
GTTAGTAATCTGACCAAAGAACTGCAGGGCAAAGAGCAAAAGCTTCTTGACCTTGAGAAAAATTTGAGTGCAGTAAATCAAGTTAAAGATTCTTTGGAAAAGGAACTTCAACTTTTG
Seq C2 exon
AAACAATAAACAAACTAAACCAAAAAGAAGAACAGTTTGCACTTATGTCTTCAGAACTGGAACAACTGAAATCTAATTTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-7/21=6-9
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.077 C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCCAAGTGCAATGAACA
R:
TCCAGTTCTGAAGACATAAGTGCA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]