RnoEX0021797 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38399702-38407202:+
Coord C1 exon
chr12:38399702-38400646
Coord A exon
chr12:38403548-38403664
Coord C2 exon
chr12:38407145-38407202
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATATAACTCGGTGTGTTAGGCT
3' ss Score
3.89
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGACTCGGCTGAGTTTGCTGAGTTAAAGACACAGATAGAGAGACTCAGACTAGATTACCAGCACGAAATAGAAAGTTTACAGAGTAAGCAGGACTCCGAACGGTCTGCCCATGCTAAAGAGATGGAGTCCATGAAGGCCAAGCTGATGAAGATCATCAAAGAGAAGGAGGACAGCCTGGAGGCCGTCAAAGCACGGCTGGACACGGCGGAAGACCAGCACCTGGTGGAGATGGAGGAGATGCTCAGCAAGCTGCAGGAGGCAGAGATTAAGGTAAAGGAACTAGAGGTTCTGCAGGCCAAGTACAGTGAACAAACCCAGGTCGTTGGTCATCTCACATCACAACTCAGTGTTGTCGAAGAACAGCTCTTGGATCTGGATGCCCTTCGGAAGGCCAACTCCGAAGGTAAACTGGAGATCGAGACACTTAGGCAGCAGCTTGAGGGAGCCGAAAAGCAGATTAAAAACTTAGAGATGGAGAGGAACGCTGAAAGTAGCAAG
Seq A exon
GCTAATAGCATTACCAAAGACCTCCAGGGAAAAGAACTAATGCTCACTAGTCTGCAGAGCAATTTGAATGAAGTCAATCAAGTGAAGGAGACTTTGGAAAAAGAACTTCAGACTTTG
Seq C2 exon
AAAGAAAAGTTTGCCAGCGCTTCAGAGGAGGCCGTCTCTACTCAGACAAGTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.410 C2=0.912
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(66.2=82.8),PF0017016=bZIP_1=WD(100=16.3)
A:
PF097694=ApoO=FE(38.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCAAGTACAGTGAACA
R:
GAGTAGAGACGGCCTCCTCTG
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]