BtaEX6010146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005235 | DPP10
Description
Bos taurus dipeptidyl-peptidase 10 (non-functional) (DPP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001078070]
Coordinates
chr2:67990497-68018124:+
Coord C1 exon
chr2:67990497-67990594
Coord A exon
chr2:68002331-68002454
Coord C2 exon
chr2:68018086-68018124
Length
124 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGTTTCCAAACTAGAGA
3' ss Score
4.74
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GCAGGTCAAGTGAACCCAACAATCAAATTATATGTTGTAAACCTATATGGACCAACTCATACTTTGGAACTCATGCCACCAGATAGCTTTAAATCAAG
Seq A exon
AGAATACTATATCACTATGGTTAAATGGGTAAGCAACACCAAGACGGTGGTCAGATGGTTGAATCGACCTCAGAACATCTCCATCCTCACAGTCTGTGAGACCACTACTGGTGCTTGTAGCAGA
Seq C2 exon
AAATATGAAATGACATCAGATACCTGGCTGTCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005235-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(9.0=100)
A:
PF0093016=DPPIV_N=FE(11.6=100)
C2:
PF0093016=DPPIV_N=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAAGTGAACCCAACA
R:
GACAGCCAGGTATCTGATGTCA
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]