HsaEX0020818 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:116503662-116520186:+
Coord C1 exon
chr2:116503662-116503759
Coord A exon
chr2:116510750-116510873
Coord C2 exon
chr2:116520148-116520186
Length
124 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGTTTCCAAACTAGAGA
3' ss Score
4.74
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCAGGTCAAGTGAACCCAACAATAAAATTATATGTTGTAAACCTGTATGGACCAACTCACACTTTGGAGCTCATGCCACCTGACAGCTTTAAATCAAG
Seq A exon
AGAATACTATATCACTATGGTTAAATGGGTAAGCAATACCAAGACTGTGGTAAGATGGTTAAACCGAGCTCAGAACATCTCCATCCTCACAGTCTGTGAGACCACTACAGGTGCTTGTAGTAAA
Seq C2 exon
AAATATGAGATGACATCAGATACGTGGCTCTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'27-27,'27-26,28-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.1=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAAGTGAACCCAACA
R:
GCTGAGAGAGCCACGTATCTG
Band lengths:
135-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)