GgaEX6043048 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28718491-28724094:-
Coord C1 exon
chr7:28723997-28724094
Coord A exon
chr7:28719936-28720059
Coord C2 exon
chr7:28718491-28718529
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTATTGTCTGTTTAGGGA
3' ss Score
9.16
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAGGTCAAACAAACCCAACGGTAAAGCTGTCTGTAGTTAATCTGTATGGACCAGCACATACACTGGAACTGATGCCACCTGACAGCTTTAAATCAAG
Seq A exon
GGAATACTACATCACCATGGTGAAATGGGTAAGCAACACCAAGGCTGTGGTCAGATGGTTAAACAGACACCAGAATATCTCCATCCTTACAGTCTGTGAAACAACAACTGGAGCTTGCAGCAGA
Seq C2 exon
AAATATGAAATGCAATCAGATCTTTGGGTTCCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.1=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAAACAAACCCAACG
R:
AGGAACCCAAAGATCTGATTGCA
Band lengths:
131-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]